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Starred repositories
Code for finding toxoplasma epitopes common to human brain proteins
Zotero extension to retrieve and validate DOIs and shortDOIs
A plugin that does one thing only: Detect and manage duplicate items in Zotero.
A zotero plugin to automatically merge duplicate items
Create "Table 1" for research papers in Python
TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.
Presentation-Ready Data Summary and Analytic Result Tables
Zotero Review Assistant is a Zotero plugin that aims to streamline the process of organizing articles for review research.
An LLM-powered knowledge curation system that researches a topic and generates a full-length report with citations.
Almanac: Retrieval-Augmented Language Models for Clinical Medicine
A package to estimate biological organ age using SomaScan plasma proteomics data
Synthetic lethality (SL) is a promising gold mine for the discovery of anti-cancer drug targets. KG4SL is the first graph neural network (GNN)-based model that uses knowledge graph for SL prediction.
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
A Bibliometric and Scientometric Python Library Powered with Artificial Intelligence Tools
A tool for creating Quantitative Structure Property/Activity Relationship (QSPR/QSAR) models.
Vina-GPU 2.0 accelerates AutoDock Vina and its related commonly derived docking methods, such as QuickVina 2 and QuickVina-W with GPUs.
LABODOCK: A Colab-Based Molecular Docking Tools
LaBOX: A Grid Box Calculation Tool for Molecular Docking
Plumb a PDF for detailed information about each char, rectangle, line, et cetera — and easily extract text and tables.
A ligand-and-structure dual-driven deep reinforcement learning method for target-specific molecular generation
TeachOpenCADD: a teaching platform for computer-aided drug design (CADD) using open source packages and data
Auto Shift Planner is a user-friendly desktop application that can design detailed employees shift schedules and solve them automatically while meeting the maximum satisfaction of constraints.
Cloud-based molecular simulations for everyone
Open source code for AlphaFold 2.
This package contains deep learning models and related scripts for RoseTTAFold
A flexible, intuitive and fast forecasting library
Financial Markets Data Visualization using Matplotlib
A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.