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Prepare the repo for opening #56

Merged
merged 11 commits into from
Feb 16, 2018
Merged

Prepare the repo for opening #56

merged 11 commits into from
Feb 16, 2018

Commits on Feb 15, 2018

  1. Move scripts in bin/ 

    The `embed_test.py`, anf `run_martinize2.py` are now located in the
`bin` directory instead of the root of the repository.

It goes the same for `entry_api.py`. In addition, this last script is
renamed `martinize2`, and get installed in the research PATH by setup.py.
    @jbarnoud
    jbarnoud committed Feb 15, 2018
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  2. Rename the martinize2 directory 

    The martinize2 library get renamed vermouth as it covers more than
martinize. This commit renames the library main directory.

WARNING: this commit breaks everything as the library is still referred
to as martinize2. Yet, making this commit separate should prevent a lot
of hassle with merge conflicts.
    @jbarnoud
    jbarnoud committed Feb 15, 2018
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  3. Fix install after the library renaming

    @jbarnoud
    jbarnoud committed Feb 15, 2018
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  4. Rename the library to vermouth 

    Fixes #55
    @jbarnoud
    jbarnoud committed Feb 15, 2018
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  5. Add license header to python files

    @jbarnoud
    jbarnoud committed Feb 15, 2018
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  6. Add license header on top of the data files 

    Fixes #51
    @jbarnoud
    jbarnoud committed Feb 15, 2018
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  7. Be clearer about the license of redistributed files

    @jbarnoud
    jbarnoud committed Feb 15, 2018
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  8. Fill the README 

    Fixes #52
    @jbarnoud
    jbarnoud committed Feb 15, 2018
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  9. Remove useless data files

    @jbarnoud
    jbarnoud committed Feb 15, 2018
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  10. Add copyright notice on setup.py

    @jbarnoud
    jbarnoud committed Feb 15, 2018
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Commits on Feb 16, 2018

  1. Fix license in setup

    @jbarnoud
    jbarnoud committed Feb 16, 2018
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