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Get L. pneumophila ST from long-read or hybrid assemblies.
Python 4
Calculate sequencing depth of Illumina short-reads
Python 1 1
Pipeline to generate consensus.fasta files and identify pangolin lineage and nextstrain clade of Sars-CoV-2 genomes from ONT sequencing
Python 1 2
Scripts that are part of our MSc-students' work
Assembly and quality assessment of Illumina short-reads
Nextflow 2
Script for ONT-basecalling
Python