Julia interface to dss-opt RNA sequence design programs.
using Pkg
pkg"add https://github.com/marcom/DssOpt_jll.jl"
pkg"add https://github.com/marcom/DssOpt.jl"
using DssOpt
# dynamics in sequence space optimisation with dynamical simulated
# annealing
opt_md("(((...)))")
opt_md("(((...)))"; verbose=true)
# steepest descent optimisiation
opt_sd("(((...)))")
opt_sd_gsl("(((...)))")
Matthies, Bienert, Torda. Dynamics in sequence space for RNA secondary structure design, JCTC, 3663 -- 3670, 2012. https://doi.org/10.1021/ct300267j