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🔭 I’m currently working on a range of machine learning projects in proteomics, workflow composition and dedicated, stand-alone, tools such as SCOPE, compareMS2 and mzRecal.
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📝 I irregularly write articles on https://magnuspalmblad.github.io/
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💬 Ask me about proteomics data analysis software
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📫 How to reach me [email protected]
Associate Professor and Head of Bioinformatics at the LUMC Center for Proteomics and Metabolomics
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Leiden University Medical Center
- Leiden, the Netherlands
- https://cpm.lumc.nl/bioinformatics/
- @magnuspalmblad
- @[email protected]
- in/magnuspalmblad
- https://bsky.app/profile/magnuspalmblad.bsky.social
Highlights
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Refactored-FastPaSS
Refactored-FastPaSS PublicForked from cmulders/Refactored-FastPaSS
FastPaSS is an GPU accerelated spectral library search tool. This version is a rewrite of the original code published by Baumgardner.
C++ 3
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compareMS2
compareMS2 PubliccompareMS2 provides a pairwise global comparison between LC-MS/MS datasets based on similarity between the tandem mass spectra. Applications include molecular phylogenetics, quality control, pathog…
C 3
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EuropePMC2ChEBI
EuropePMC2ChEBI PublicKNIME workflow for extracting ChEBI annotations from a Europe PMC literature search
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