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Projet M2BI : Simulation d'une reconstitution denovo de génome circulaire

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Projet_Genome !

REQUIRES :

python3 with library copy, random and argparse

HOW TO RUN

python3 src/main.py [-h] [-rd RANDOM_GENOM] [-wg WITH_GENOM] [-out OUTPUT_FILE] [--with_check] length_reads number_reads length_kmers

flag :

-h : help

-rd : random genom (need a int after the flag) example : -rd 10

-wg : with genom (need a path after the flag) example : -wg example/res1.txt

!!! file which contains the genom have to be in fasta format or in a file which contains the genom ONLY !!!

--with_check : check if the start genom and genom built with the program are the same

-out : name of the outfile (default : result.txt) example : -out genom_result.txt

example with random genom : python3 src/main.py 100 5000 20 -rd 10000

example with genom in a fasta file : python3 src/main.py 10 9 8 -wg example/res1.txt

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Projet M2BI : Simulation d'une reconstitution denovo de génome circulaire

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