Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

A set of tools for accurate quantitation of single-cell allele-specific expression

RNA-seq aligner

R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing

Python and C++ code for reading and writing genomics data.

Deep neural networks for predicting CpG methylation