LCSKPOA: Enabling banded semi-global partial order alignments via efficient and accurate backbone generation through extended lcsk++.
Rust 1.65.0+ should be installed.
Download the repository.
git clone https://github.com/lorewar2/lcskgraph.git
cd LCSKGRAPH
Replicate the results in paper:
bash replicate_results.sh
Run bam file:
cargo run --release -- -p "data/sample_pacbio.bam" "output.fa" -b 200 -k 12
Run fasta file:
cargo run --release -- -p "data/pacbio.fa" "output.fa" -b 200 -k 12
If you are using LCSKPOA in your work, please cite: