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python library for working with ontologies and ontology associations

Python 123 30 Updated Nov 5, 2024

RNA foundation model

Jupyter Notebook 203 22 Updated Apr 1, 2024

RiboNucleic Acid (RNA) Language Model

Python 68 10 Updated Nov 11, 2024

Python library to handle Gene Ontology (GO) terms

Python 781 210 Updated Nov 9, 2024

PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering

Go 111 18 Updated Oct 1, 2024

Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

Nextflow 34 35 Updated Nov 11, 2024

A library for QC report based on MultiQC framework

Python 14 9 Updated Nov 10, 2024

PRESTO: Correction of turnover numbers in enzyme-constraint metabolic models

MATLAB 4 1 Updated Mar 24, 2023

Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks

R 159 32 Updated Nov 9, 2024

A Python Framework for Modeling and Analysis of Signaling Systems

Python 28 13 Updated Nov 6, 2024

Pyzotero: a Python client for the Zotero API

Python 900 98 Updated Nov 11, 2024

High accuracy RAG for answering questions from scientific documents with citations

Python 6,356 601 Updated Nov 9, 2024

A python parametric CAD scripting framework based on OCCT

Python 3,215 293 Updated Nov 10, 2024

Python package for 3D geometry CAD/BIM/CAM

SWIG 1,373 377 Updated Nov 11, 2024

High performance self-hosted photo and video management solution.

TypeScript 51,503 2,723 Updated Nov 11, 2024

The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis software.

C# 233 100 Updated Nov 11, 2024

DIA-NN - a universal automated software suite for DIA proteomics data analysis.

C++ 279 54 Updated Nov 9, 2024

WebAssembly Registry (Warg)

Rust 195 29 Updated Oct 23, 2024

a full featured file system for online data storage

Python 1,109 113 Updated Nov 2, 2024

[NeurIPS 2024] SWE-agent takes a GitHub issue and tries to automatically fix it, using GPT-4, or your LM of choice. It can also be employed for offensive cybersecurity or competitive coding challen…

Python 13,676 1,383 Updated Nov 7, 2024

ERP beyond your fridge - Grocy is a web-based self-hosted groceries & household management solution for your home

Blade 6,857 568 Updated Nov 8, 2024

A container for grocy - the ERP application for your kitchen https://grocy.info

Dockerfile 344 43 Updated Nov 10, 2024

Stub file (*.pyi) generator for PyO3

Rust 59 11 Updated Nov 11, 2024
Dockerfile 666 104 Updated Nov 10, 2024

Fork of overseerr for jellyfin support.

TypeScript 3,818 240 Updated Nov 11, 2024

VPN client in a thin Docker container for multiple VPN providers, written in Go, and using OpenVPN or Wireguard, DNS over TLS, with a few proxy servers built-in.

Go 7,955 368 Updated Nov 11, 2024

A JSON-like data structure (a CRDT) that can be modified concurrently by different users, and merged again automatically.

JavaScript 3,998 176 Updated Nov 6, 2024

A Python framework for high performance GPU simulation and graphics

Python 4,236 242 Updated Nov 11, 2024

📓 eLabFTW is the most popular open source electronic lab notebook for research labs.

PHP 1,009 218 Updated Nov 8, 2024
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