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  1. MUSE MUSE Public

    Forked from AltschulerWu-Lab/MUSE

    MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states for spatially resolved transcriptomics data.

    Jupyter Notebook

  2. mdanalysis mdanalysis Public

    Forked from MDAnalysis/mdanalysis

    MDAnalysis is a Python library to analyze molecular dynamics simulations.

    Python

  3. nglview nglview Public

    Forked from nglviewer/nglview

    Jupyter widget to interactively view molecular structures and trajectories

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  4. openmmtools openmmtools Public

    Forked from choderalab/openmmtools

    A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine.

    Python

  5. openmmforcefields openmmforcefields Public

    Forked from openmm/openmmforcefields

    CHARMM and AMBER forcefields for OpenMM (with small molecule support)

    Python

  6. molmaker molmaker Public

    Forked from mnmelo/molmaker

    A tool to create molecule structures from topology information (GROMACS-only)

    Python