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Sun Yat-sen University Shenzhen Campus
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Collection of various algorithms in mathematics, machine learning, computer science and physics implemented in C++ for educational purposes.
Python implementation of the Loom file format - https://loompy.org
htseq / htseq
Forked from simon-anders/htseqHTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
The C++ Core Guidelines are a set of tried-and-true guidelines, rules, and best practices about coding in C++
A graph library using modern C++ features (e.g., C++20 ranges) to be as efficient and user-friendly as possible.
My continuously updated Machine Learning, Probabilistic Models and Deep Learning notes and demos (2000+ slides) 我不间断更新的机器学习,概率模型和深度学习的讲义(2000+页)和视频链接
Hidden Markov Models in Python, with scikit-learn like API
Phylogenetic orthology inference for comparative genomics
Python 3.8+ toolbox for submitting jobs to Slurm
CellRank: dynamics from multi-view single-cell data
Fast zero-overhead bindings between NumPy and Eigen
LevelDB is a fast key-value storage library written at Google that provides an ordered mapping from string keys to string values.
Seamless operability between C++11 and Python
Configure workflow/pipeline tests using yaml files.
A docker image with R packages to analyze Single-Cell RNA-Seq data
C++ DevBox is a docker devcontainer for C++ development. Based on Debian with LLVM, GCC, VulkanSDK, Mesa, CMake, VCPKG, mold, zsh.
scRNAseq analysis notes from Ming Tang
Info related to running a Cromwell server on a SLURM cluster
🧑🏫 60+ Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), ga…