Collection of various algorithms in mathematics, machine learning, computer science and physics implemented in C++ for educational purposes.

SIMD partial order alignment tool/library

Python implementation of the Loom file format - https://loompy.org

HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.

The C++ Core Guidelines are a set of tried-and-true guidelines, rules, and best practices about coding in C++

A graph library using modern C++ features (e.g., C++20 ranges) to be as efficient and user-friendly as possible.

计算机自学指南

My continuously updated Machine Learning, Probabilistic Models and Deep Learning notes and demos (2000+ slides) 我不间断更新的机器学习，概率模型和深度学习的讲义(2000+页)和视频链接

Main gperftools repository

Hidden Markov Models in Python, with scikit-learn like API

Phylogenetic orthology inference for comparative genomics

《统计学习方法》的代码实现

Python 3.8+ toolbox for submitting jobs to Slurm

my ttf fonts

CellRank: dynamics from multi-view single-cell data

Python implementation of Monocle

Fast zero-overhead bindings between NumPy and Eigen

LevelDB is a fast key-value storage library written at Google that provides an ordered mapping from string keys to string values.

Achieve a tiny STL in C++11

Seamless operability between C++11 and Python

Configure workflow/pipeline tests using yaml files.

Mummer alignment tool

A docker image for single-cell analysis

A docker image with R packages to analyze Single-Cell RNA-Seq data

C++ DevBox is a docker devcontainer for C++ development. Based on Debian with LLVM, GCC, VulkanSDK, Mesa, CMake, VCPKG, mold, zsh.

A list of scRNA-seq analysis tools

scRNAseq analysis notes from Ming Tang

Info related to running a Cromwell server on a SLURM cluster

WDL Analysis Research Pipelines

🧑‍🏫 60+ Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), ga…