Code for CODEX data

Python script to parse blast files and assign each read to the taxonomic of the lowest common ancestor

Interactive visualisation of CellphoneDB results

Codes from manuscript

Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also…

SGS, is a user-friendly, collaborative and versatile browser for visualizing single-cell and spatial multiomics data.

Python and R code used to produce the analysis in Almet et al. (2023), "Inferring pattern-driving intercellular flows from single-cell and spatial transcriptomics"

Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.

Source code for computational analyses and to reproduce all figures in the following publication: Genome-scale quantification and prediction of drug-induced readthrough of pathogenic premature term…

An optimized workflow for producing k-mer count matrices for large GWAS panels

Yet another Hi-C scaffolding tool

Single-cell analysis of cotton fiber

T2T genome assembly of cotton DD5-genome for Gossypium raimondii

Visualise and analyse nanopore (ONT) raw signals

Spatial One

Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval

Pan-genome Analysis

Analyse RNA feature distributions.

Fast algorithms for GLM-PCA.

Multi-level visualization of genomic statistical variables on rectangular chromosomes

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files