SPARQL Anything is a system for Semantic Web re-engineering that allows users to ... query anything with SPARQL.

An attempt to answer the age old interview question "What happens when you type google.com into your browser and press enter?"

A retro game engine for Python

Eclipse Theia is a cloud & desktop IDE framework implemented in TypeScript.

A nanoGPT pipeline packed in a spreadsheet

Characterize 3'UTR variants

MORFEE: Mutation on Open Reading FramE annotation

This tool extracts and displays data from the Recall feature in Windows 11, providing an easy way to access information about your PC's activity snapshots.

The iconic SVG, font, and CSS toolkit

Chromatin ACcessibility and Transcriptomics Unifying Software

mtDNA-Server 2: A web-service and Nextflow pipeline for mitochondrial genomes

What should perfect bioinformatic tools be like?

Source files for a book on Principal component analysis

Automatically exported from code.google.com/p/freebase-suggest

Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gigascience/article/7/7/giy064/5026174

Nature of Code with p5.js and Notion workflow / build system.

A nextflow pipeline for calling exome CNVs

A Blockly implementation of SPARQL. Supports converting SPARQL into visual blocks and vice versa. Supports all of SPARQL 1.1 Query & Update as well as SPARQL*.

An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Experimental features for Nextflow

Bioinformatics pipeline that makes use of expression and open chromatin data to identify differentially active transcription factors across conditions.

Constructing a pangenome gene graph

gatk4 RNA variant calling pipeline

Sequence kernel association test (SKAT)