• Add ncRNA name map output
• Fix typos

• Fix typos
• Add tolerance to null design file
• Fix hisat2 alignment parameters
• Add singularity support

• fix some known bugs for generate input of lncPipeReporter
• fix docker image supporting bugs

• Remove the functions that can automaticaly build index for alignment.
• fix '-resume' not working for alignment step.
• Add support for skipping qc analysis steps

#Major improvement

• support for extra non-human species
• add fastp support
• add HTseq quantification support
• add DESeq2 and NOIseq DEanalysis surport
• fix a big bug that filtered a lot of known lncRNAs !
• change the quantification from transcripts level to gene level !
• fix exon miscounting induced by differ output of stringtie and cufflinks
• fix several spelling errors in readme and code file

v0.1.1
fix issues caused by configuration in multiple operation system and environment