initial commit

levitabris · Jan 4, 2024 · 82c4f79 · 82c4f79
commit 82c4f79
Show file tree

Hide file tree

Showing 4 changed files with 361 additions and 0 deletions.
diff --git a/doi_lookup.py b/doi_lookup.py
@@ -0,0 +1,69 @@
+import os
+import argparse
+import requests
+import bibtexparser
+from bibtexparser.bwriter import BibTexWriter
+
+def lookup_dois(bib_file):
+
+ # Load bibtex file
+ with open(bib_file) as f:
+ bib_database = bibtexparser.load(f)
+
+ # Base API URL
+ BASE_URL = 'https://api.semanticscholar.org/graph/v1/paper/'
+
+ # Missing entries
+ missing = []
+ lookup_length = len(bib_database.entries)
+
+ # Loop through bibtex entries
+ for entry in bib_database.entries:
+ print('=' * 120)
+ if 'doi' not in entry:
+ # Check if corpus ID is available
+ corpus_id = entry.get('url').split(':')[2]
+ if corpus_id:
+ print(f'📄{entry.get("title")} \n🔎Fetching DOI... ')
+ # Make API request
+ url = BASE_URL + f'CorpusId:{corpus_id}?fields=externalIds'
+ response = requests.get(url)
+
+ # Extract DOI if present
+ data = response.json()
+
+ doi = data['externalIds'].get('DOI')
+ arxiv = data['externalIds'].get('ArXiv')
+ dblp = data['externalIds'].get('DBLP')
+
+ # Write DOI info if found
+ if doi:
+ entry['DOI'] = doi
+ print(f"✅Added DOI: {doi} to {entry['ID']}")
+ elif arxiv:
+ entry['ArXiv'] = arxiv
+ print(f"🔄No DOI found for: {entry['ID']}, added ArXiv {arxiv}")
+ elif dblp:
+ entry['DBLP'] = dblp
+ print(f"🔄No ArXiv found for: {entry['ID']}, added DBLP {dblp}")
+ else:
+ missing += [entry.get('title')]
+ print(f"❌No DOI found for: {entry['ID']}")
+
+ print('=' * 120)
+ print(f'Found [{lookup_length - len(missing)} / {lookup_length}] DOIs\nMissing ones are:')
+ print(''.join(['\n❓' + title for title in missing]))
+
+ # Write out modified bibtex
+ writer = BibTexWriter()
+
+ name = os.path.splitext(bib_file)[0]
+ with open(f'{name}_modified.bib', 'w') as outfile:
+ bibtexparser.dump(bib_database, outfile, writer)
+
+if __name__ == '__main__':
+ parser = argparse.ArgumentParser()
+ parser.add_argument('bibfile', help='Bibtex file')
+ args = parser.parse_args()
+
+ lookup_dois(args.bibfile)
diff --git a/references.bib b/references.bib
@@ -0,0 +1,126 @@
+@article{Schrder2023TellingSW,
+ title={Telling stories with data - A systematic review},
+ author={Kay Schr{\"o}der and Wiebke Eberhardt and Poornima Belavadi and Batoul Ajdadilish and Nanette van Haften and Ed Overes and Taryn Brouns and Andr{\'e} Calero Valdez},
+ journal={ArXiv},
+ year={2023},
+ volume={abs/2312.01164},
+ url={https://api.semanticscholar.org/CorpusID:265609919}
+}
+
+@article{Sderlund2023RecognizingNC,
+ title={Recognizing non-designers’ contribution in the process of designing information on visual management boards: a metaphorical approach},
+ author={Carina S{\"o}derlund},
+ journal={Design Science},
+ year={2023},
+ volume={9},
+ url={https://api.semanticscholar.org/CorpusID:259949509}
+}
+
+@inproceedings{Huron2020IEEEVW,
+ title={IEEE VIS Workshop on Data Vis Activities to Facilitate Learning, Reflecting, Discussing, and Designing},
+ author={Samuel Huron and Benjamin Bach and Uta Hinrichs and Mandy Keck and Jonathan Roberts},
+ year={2020},
+ url={https://api.semanticscholar.org/CorpusID:221406934}
+}
+
+@article{Khowaja2022APD,
+ title={A Participatory Design Approach to Develop Visualization of Wearable Actigraphy Data for Health Care Professionals: Case Study in Qatar},
+ author={Kamran Khowaja and Wafa Waheeda Syed and Meghna Singh and Shahrad Taheri and Odette Chagoury and Dena Al-Thani and Micha{\"e}l Aupetit},
+ journal={JMIR Human Factors},
+ year={2022},
+ volume={9},
+ url={https://api.semanticscholar.org/CorpusID:248024869}
+}
+
+@article{Karim2022ParticipatoryDF,
+ title={Participatory Design for Mental Health Data Visualization on a Social Robot},
+ author={Raida Karim and Edgar L{\'o}pez and Elin A. Bj{\"o}rling and Maya Cakmak},
+ journal={ArXiv},
+ year={2022},
+ volume={abs/2210.06469},
+ url={https://api.semanticscholar.org/CorpusID:252873309}
+}
+
+@inproceedings{Boork2015OfficeWiseE,
+ title={OfficeWise : Energy feedback in office workplaces},
+ author={Magdalena Boork and Anton Gustafsson and Sander Dijkhuis and Cecilia Katzeff},
+ year={2015},
+ url={https://api.semanticscholar.org/CorpusID:113985429}
+}
+
+@article{Morse2022CodesignOT,
+ title={Co-design of the Transgender Health Information Resource: Web-Based Participatory Design},
+ author={Bradford W. Morse and Andrey Soares and Kate Ytell and Kristen Desanto and Marvyn Allen and Brooke Dorsey Holliman and Rita S Lee and Bethany M. Kwan and Lisa M. Schilling},
+ journal={Journal of Participatory Medicine},
+ year={2022},
+ volume={15},
+ url={https://api.semanticscholar.org/CorpusID:253558255}
+}
+
+@article{Pierre2021GettingOT,
+ title={Getting Ourselves Together: Data-centered participatory design research \& epistemic burden},
+ author={Jennifer Pierre and Roderic N. Crooks and Morgan E. Currie and Britt S. Paris and Irene V. Pasquetto},
+ journal={Proceedings of the 2021 CHI Conference on Human Factors in Computing Systems},
+ year={2021},
+ url={https://api.semanticscholar.org/CorpusID:233987721}
+}
+
+@article{Knowles2021ParticipatoryCO,
+ title={Participatory codesign of patient involvement in a Learning Health System: How can data‐driven care be patient‐driven care?},
+ author={Sarah E Knowles and Dawn Allen and Ailsa Donnelly and Jackie Flynn and Kay Gallacher and Annmarie Lewis and Grace-anne McCorkle and Manoj Mistry and Pat Walkington and Lisa Brunton},
+ journal={Health Expectations},
+ year={2021},
+ volume={25},
+ pages={103 - 115},
+ url={https://api.semanticscholar.org/CorpusID:239035887}
+}
+
+@article{Chowdhury2019CollaborativeWF,
+ title={Collaborative Workspace for Employee Engagement Leveraging Social Media Architecture},
+ author={Khairul Chowdhury and Diego Lamacchia},
+ journal={Day 3 Wed, November 13, 2019},
+ year={2019},
+ url={https://api.semanticscholar.org/CorpusID:209069981}
+}
+
+@article{stervang2022DevelopmentOA,
+ title={Development of a health information system to promote emergency care pathways: A participatory design study},
+ author={Christina {\O}stervang and Annmarie Touborg Lassen and Thomas Schmidt and E. Coyne and Karin Brochstedt Dieperink and Charlotte Myhre Jensen},
+ journal={Digital Health},
+ year={2022},
+ volume={8},
+ url={https://api.semanticscholar.org/CorpusID:255151877}
+}
+
+@article{Panagiotidou2022CommunicatingQU,
+ title={Communicating qualitative uncertainty in data visualization},
+ author={Georgia Panagiotidou and Andrew Vande Moere},
+ journal={Information Design Journal},
+ year={2022},
+ url={https://api.semanticscholar.org/CorpusID:253408603}
+}
+
+@inproceedings{Chiossi2023PhysioCHITB,
+ title={PhysioCHI: Towards Best Practices for Integrating Physiological Signals in HCI},
+ author={Francesco Chiossi and Ekaterina R. Stepanova and Benjamin Tag and Monica Perusqu{\'i}a-Hern{\'a}ndez and Alexandra Kitson and Arindam Dey and Sven Mayer and Abdallah El Ali},
+ year={2023},
+ url={https://api.semanticscholar.org/CorpusID:266053756}
+}
+
+@inproceedings{GrabskaGradzinska2022DataSV,
+ title={Data Structure Visualization as an Aid in Collaborative Game Design},
+ author={Iwona Grabska-Gradzinska and Ewa Janina Grabska and Wojciech Palacz and Leszek A. Nowak and Jan K. Argasiński},
+ booktitle={Cooperative Design, Visualization, and Engineering},
+ year={2022},
+ url={https://api.semanticscholar.org/CorpusID:252408277}
+}
+
+@article{Xue2019AffectiveWallDC,
+ title={AffectiveWall: Designing Collective Stress-Related Physiological Data Visualization for Reflection},
+ author={Mengru Xue and Rong-Hao Liang and Bin Yu and Mathias Funk and Jun Hu and Loe M. G. Feijs},
+ journal={IEEE Access},
+ year={2019},
+ volume={7},
+ pages={131289-131303},
+ url={https://api.semanticscholar.org/CorpusID:203162524}
+}
diff --git a/references_modified.bib b/references_modified.bib
@@ -0,0 +1,139 @@
+@inproceedings{Boork2015OfficeWiseE,
+ author = {Magdalena Boork and Anton Gustafsson and Sander Dijkhuis and Cecilia Katzeff},
+ title = {OfficeWise : Energy feedback in office workplaces},
+ url = {https://api.semanticscholar.org/CorpusID:113985429},
+ year = {2015}
+}
+
+@inproceedings{Chiossi2023PhysioCHITB,
+ DOI = {10.1145/3613905.3636286},
+ author = {Francesco Chiossi and Ekaterina R. Stepanova and Benjamin Tag and Monica Perusqu{\'i}a-Hern{\'a}ndez and Alexandra Kitson and Arindam Dey and Sven Mayer and Abdallah El Ali},
+ title = {PhysioCHI: Towards Best Practices for Integrating Physiological Signals in HCI},
+ url = {https://api.semanticscholar.org/CorpusID:266053756},
+ year = {2023}
+}
+
+@article{Chowdhury2019CollaborativeWF,
+ DOI = {10.2118/197325-ms},
+ author = {Khairul Chowdhury and Diego Lamacchia},
+ journal = {Day 3 Wed, November 13, 2019},
+ title = {Collaborative Workspace for Employee Engagement Leveraging Social Media Architecture},
+ url = {https://api.semanticscholar.org/CorpusID:209069981},
+ year = {2019}
+}
+
+@inproceedings{GrabskaGradzinska2022DataSV,
+ DOI = {10.1007/978-3-031-16538-2_24},
+ author = {Iwona Grabska-Gradzinska and Ewa Janina Grabska and Wojciech Palacz and Leszek A. Nowak and Jan K. Argasiński},
+ booktitle = {Cooperative Design, Visualization, and Engineering},
+ title = {Data Structure Visualization as an Aid in Collaborative Game Design},
+ url = {https://api.semanticscholar.org/CorpusID:252408277},
+ year = {2022}
+}
+
+@inproceedings{Huron2020IEEEVW,
+ author = {Samuel Huron and Benjamin Bach and Uta Hinrichs and Mandy Keck and Jonathan Roberts},
+ title = {IEEE VIS Workshop on Data Vis Activities to Facilitate Learning, Reflecting, Discussing, and Designing},
+ url = {https://api.semanticscholar.org/CorpusID:221406934},
+ year = {2020}
+}
+
+@article{Karim2022ParticipatoryDF,
+ DOI = {10.48550/arXiv.2210.06469},
+ author = {Raida Karim and Edgar L{\'o}pez and Elin A. Bj{\"o}rling and Maya Cakmak},
+ journal = {ArXiv},
+ title = {Participatory Design for Mental Health Data Visualization on a Social Robot},
+ url = {https://api.semanticscholar.org/CorpusID:252873309},
+ volume = {abs/2210.06469},
+ year = {2022}
+}
+
+@article{Khowaja2022APD,
+ DOI = {10.2196/25880},
+ author = {Kamran Khowaja and Wafa Waheeda Syed and Meghna Singh and Shahrad Taheri and Odette Chagoury and Dena Al-Thani and Micha{\"e}l Aupetit},
+ journal = {JMIR Human Factors},
+ title = {A Participatory Design Approach to Develop Visualization of Wearable Actigraphy Data for Health Care Professionals: Case Study in Qatar},
+ url = {https://api.semanticscholar.org/CorpusID:248024869},
+ volume = {9},
+ year = {2022}
+}
+
+@article{Knowles2021ParticipatoryCO,
+ DOI = {10.1111/hex.13345},
+ author = {Sarah E Knowles and Dawn Allen and Ailsa Donnelly and Jackie Flynn and Kay Gallacher and Annmarie Lewis and Grace-anne McCorkle and Manoj Mistry and Pat Walkington and Lisa Brunton},
+ journal = {Health Expectations},
+ pages = {103 - 115},
+ title = {Participatory codesign of patient involvement in a Learning Health System: How can data‐driven care be patient‐driven care?},
+ url = {https://api.semanticscholar.org/CorpusID:239035887},
+ volume = {25},
+ year = {2021}
+}
+
+@article{Morse2022CodesignOT,
+ DOI = {10.2196/38078},
+ author = {Bradford W. Morse and Andrey Soares and Kate Ytell and Kristen Desanto and Marvyn Allen and Brooke Dorsey Holliman and Rita S Lee and Bethany M. Kwan and Lisa M. Schilling},
+ journal = {Journal of Participatory Medicine},
+ title = {Co-design of the Transgender Health Information Resource: Web-Based Participatory Design},
+ url = {https://api.semanticscholar.org/CorpusID:253558255},
+ volume = {15},
+ year = {2022}
+}
+
+@article{Panagiotidou2022CommunicatingQU,
+ DOI = {10.1075/idj.22014.pan},
+ author = {Georgia Panagiotidou and Andrew Vande Moere},
+ journal = {Information Design Journal},
+ title = {Communicating qualitative uncertainty in data visualization},
+ url = {https://api.semanticscholar.org/CorpusID:253408603},
+ year = {2022}
+}
+
+@article{Pierre2021GettingOT,
+ DOI = {10.1145/3411764.3445103},
+ author = {Jennifer Pierre and Roderic N. Crooks and Morgan E. Currie and Britt S. Paris and Irene V. Pasquetto},
+ journal = {Proceedings of the 2021 CHI Conference on Human Factors in Computing Systems},
+ title = {Getting Ourselves Together: Data-centered participatory design research \& epistemic burden},
+ url = {https://api.semanticscholar.org/CorpusID:233987721},
+ year = {2021}
+}
+
+@article{Schrder2023TellingSW,
+ DOI = {10.48550/arXiv.2312.01164},
+ author = {Kay Schr{\"o}der and Wiebke Eberhardt and Poornima Belavadi and Batoul Ajdadilish and Nanette van Haften and Ed Overes and Taryn Brouns and Andr{\'e} Calero Valdez},
+ journal = {ArXiv},
+ title = {Telling stories with data - A systematic review},
+ url = {https://api.semanticscholar.org/CorpusID:265609919},
+ volume = {abs/2312.01164},
+ year = {2023}
+}
+
+@article{Sderlund2023RecognizingNC,
+ DOI = {10.1017/dsj.2023.14},
+ author = {Carina S{\"o}derlund},
+ journal = {Design Science},
+ title = {Recognizing non-designers’ contribution in the process of designing information on visual management boards: a metaphorical approach},
+ url = {https://api.semanticscholar.org/CorpusID:259949509},
+ volume = {9},
+ year = {2023}
+}
+
+@article{stervang2022DevelopmentOA,
+ DOI = {10.1177/20552076221145856},
+ author = {Christina {\O}stervang and Annmarie Touborg Lassen and Thomas Schmidt and E. Coyne and Karin Brochstedt Dieperink and Charlotte Myhre Jensen},
+ journal = {Digital Health},
+ title = {Development of a health information system to promote emergency care pathways: A participatory design study},
+ url = {https://api.semanticscholar.org/CorpusID:255151877},
+ volume = {8},
+ year = {2022}
+}
+
+@article{Xue2019AffectiveWallDC,
+ DOI = {10.1109/ACCESS.2019.2940866},
+ author = {Mengru Xue and Rong-Hao Liang and Bin Yu and Mathias Funk and Jun Hu and Loe M. G. Feijs},
+ journal = {IEEE Access},
+ pages = {131289-131303},
+ title = {AffectiveWall: Designing Collective Stress-Related Physiological Data Visualization for Reflection},
+ url = {https://api.semanticscholar.org/CorpusID:203162524},
+ volume = {7},
+ year = {2019}
+}
diff --git a/requirements.txt b/requirements.txt
@@ -0,0 +1,27 @@
+# This file may be used to create an environment using:
+# $ conda create --name <env> --file <this file>
+# platform: osx-arm64
+backoff=2.2.1=pypi_0
+bibtexparser=1.4.1=pypi_0
+bzip2=1.0.8=h620ffc9_4
+ca-certificates=2023.12.12=hca03da5_0
+certifi=2023.11.17=pypi_0
+charset-normalizer=3.3.2=pypi_0
+crossref=0.1.2=pypi_0
+idna=3.6=pypi_0
+libffi=3.4.4=hca03da5_0
+ncurses=6.4=h313beb8_0
+openssl=3.0.12=h1a28f6b_0
+pip=23.3.1=py311hca03da5_0
+pyparsing=3.1.1=pypi_0
+python=3.11.5=hb885b13_0
+readline=8.2=h1a28f6b_0
+requests=2.31.0=pypi_0
+setuptools=68.2.2=py311hca03da5_0
+sqlite=3.41.2=h80987f9_0
+tk=8.6.12=hb8d0fd4_0
+tzdata=2023c=h04d1e81_0
+urllib3=2.1.0=pypi_0
+wheel=0.41.2=py311hca03da5_0
+xz=5.4.5=h80987f9_0
+zlib=1.2.13=h5a0b063_0