First, please note the following:
- The SciAnnotate standalone server only is available in SciAnnotate v1.0 and above.
- The standalone server is experimental and should not be used for sensitive data or systems accessible from the internet.
Run the installation script in “unprivileged” mode
./install.sh -u
Start the standalone server
python standalone.py
You should then be able to access the SciAnnotate server from the address printed out by standalone.py.
- Access the file labelFunctionExecutor.py
- Implement / Import your labeling function
- Add your function and corresponding alias to LABELING_FUNCTION_SET
LABELING_FUNCTION_SET = {"alias": your_new_function}
- Labeling Function Real Time Debug
- Labeling Function Hot Append
- MD5 Color Generation, Stable color for each added labeing function
- Recontruct basic storage logic of annotations from labeling function, annotations from labeling function will appear in ann file like F1, F2, etc...
- Color of annotations which are not defined in visual.conf will be assigned a color based on MD5 hash (Frontend control)
- Remove unnecessary error comments to improve visual effect
- All feature returns which will be rendered by frontend must use get_document to return a complete object
import sys
import re
def contactLabeler(text="", entity_index=None):
res = dict()
entities = [
["F" + str(next(entity_index)), "Contact-Email", [(pos.start(), pos.end())], text[pos.start(): pos.end()]]
for pos in re.finditer("^[a-zA-Z0-9_-]+@[a-zA-Z0-9_-]+(\.[a-zA-Z0-9_-]+)+$", text)
]
entities.extend(
[
["F" + str(next(entity_index)), "Contact-Phone", [(pos.start(), pos.end())], text[pos.start(): pos.end()]]
for pos in re.finditer("(\d{3}[-\.\s]??\d{3}[-\.\s]??\d{4}|\(\d{3}\)\s*\d{3}[-\.\s]??\d{4}|\d{3}[-\.\s]??\d{4})", text)
]
)
entity_list = set()
for index, entity in enumerate(entities):
entity_list.add(entity[1])
entities[index][1] = '{}_{}'.format(str(sys._getframe().f_code.co_name), entity[1])
res["entities"] = entities
return res
- Add Sign Up Entry, User now can create their own account without asking administor for help
If you would like to reference SciAnnotate in a publication, please use:
@software{SciAnnotate2021github,
author = {Mengyang Liu, Haozheng Luo, Leonard Thong, Yinghao Li, Chao Zhang, Le Song },
title = {SciAnnotate-A Tool for Integrating Weak Labeling Sources for Sequence Labeling},
url = {https://github.com/robinzixuan/SciAnnotate},
version = {0.1.4},
year = {2021},
}