updated bits to work with topgate paper

afmdensityplot.py

@@ -14,8 +14,9 @@ def plot_segments(ax, segs=np.array([[[1,2],[2,2]]]) ):
  line_segments = LineCollection(segs,linewidth=0.8,colors='b')
  ax.add_collection(line_segments)
 def plot_tubes(ax,segs,junctions):
+ ax.scatter(junctions[:,0],junctions[:,1],c="r", s=30, linewidth=0.8, marker="x")
  plot_segments(ax,segs)
- ax.scatter(junctions[:,0],junctions[:,1],c="c", s=30, linewidth=2, marker="x")
+
 def check_intersect(s1,s2):
  #assert that x intervals overlap
  if max(s1[:,0])<min(s2[:,0]):

fetplot.py

@@ -222,13 +222,13 @@ def updownplot(x,y,**kwargs):
 
 def tile_data(df, column=None,row='device', color="fabstep",
  colwrap=None, show=True, save=False, v=False, xlim="", ylim="", sharey=True, x="VG", y="ID", log=True, updown=False, palette=hls,
- col_order=None, hue_order=None, ls='-', marker='', xlabel='', ylabel='', fontscale=1, close=False):
+ col_order=None, hue_order=None, ls='-', marker='', xlabel='', ylabel='', fontscale=1, close=False,hue_kws=None,legend=True):
  if v:
  print("dataframe pre tile_data()")
  get_info(df)
  sns.set(style="ticks",font_scale=fontscale,palette=palette)
  # Initialize a grid of plots with an Axes for each walk
- grid = sns.FacetGrid(df, col=column, hue=color,row=row, col_wrap=colwrap, size=4,sharey=sharey, col_order=col_order, hue_order=hue_order,legend_out=True)
+ grid = sns.FacetGrid(df, col=column, hue=color,row=row, col_wrap=colwrap, size=4,sharey=sharey, col_order=col_order, hue_order=hue_order,legend_out=True,hue_kws=hue_kws)
  # Draw a line plot to show the trajectory of each random walk
  if updown:
  grid.map(updownplot, x, y,ls=ls,marker=marker)
@@ -247,7 +247,8 @@ def tile_data(df, column=None,row='device', color="fabstep",
  grid.set(ylim=ylim)
  if xlabel and ylabel:
  grid.set_axis_labels(xlabel, ylabel)
- plt.legend(loc='best', fancybox=True, framealpha=0.5)
+ if legend:
+ plt.legend(loc='best', fancybox=True, framealpha=0.5)
  # Adjust the arrangement of the plots
  # grid.fig.tight_layout(w_pad=1)
  # sns.plt.legend(loc='upper left',bbox_to_anchor=(1,0.5))