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Showing results

Scientific Inkscape: Inkscape extensions for figure resizing and editing

Python 475 19 Updated Jul 30, 2024

Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data

R 158 34 Updated Jul 22, 2024

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Nextflow 825 681 Updated Jul 22, 2024

Lightweight lockfile for conda environments

Python 461 102 Updated Aug 1, 2024

Write reusable, composable and modular R code

R 837 47 Updated Jul 1, 2024

Salt to configure Linux and Mac (x86_64, arm64) for the BBS

SaltStack 1 3 Updated May 2, 2024

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

R 6,208 217 Updated Jul 11, 2024

A comprehensive guide on how to create beautiful scientific figures for technical publications, presentations, and posters

TeX 150 4 Updated Apr 24, 2024

A data framework for biology.

Python 106 8 Updated Aug 1, 2024

Create equal-area histograms with 'ggplot2'

R 11 Updated Jul 23, 2023

Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells and cells with shared gene-expression programs.

Python 24 7 Updated Oct 16, 2021

⛅ The right way to check the weather

Python 24,181 1,085 Updated Jul 2, 2024

A curated list of Quarto talks, tools, examples & articles! Contributions welcome!

1,647 114 Updated Apr 23, 2024

Algorithmically create or extend categorical colour palettes

Python 171 7 Updated Jun 18, 2024

A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.

Python 69 9 Updated Aug 1, 2024

The R Installation Manager

Rust 605 23 Updated Jul 29, 2024

Onboarding materials for the Greene Lab

31 21 Updated Aug 1, 2023

An open access book on scientific visualization using python and matplotlib

Python 10,180 969 Updated Jan 22, 2024

A function definition generator.

R 94 12 Updated Mar 21, 2024

An inversion of renv for low effort reproducible R package libraries

R 147 7 Updated Jun 9, 2023

An R package for developers to check user-supplied function arguments

R 14 Updated Oct 16, 2021

minimal example implementations for bioinformatics workflow managers

Python 255 43 Updated Oct 27, 2021

Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.

Python 18 4 Updated Jun 13, 2022

A Collaborative list of things to know before submitting to CRAN

288 22 Updated May 13, 2024

A collection of modern/faster/saner alternatives to common unix commands.

30,460 773 Updated Jul 15, 2024

A simple Snakemake profile for Slurm without --cluster-config

Shell 124 15 Updated Jun 20, 2024

R package with functions to compute summary statistics on small counts in a sparse matrix

R 9 1 Updated Jul 13, 2021

A small utility for getting some info post-hoc about a program's run.

C++ 7 Updated Feb 23, 2021

A simple Vue.js plugin for Mixpanel

JavaScript 39 4 Updated Jul 19, 2023
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