latchbio-nfcore
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ampliseq
ampliseq PublicForked from nf-core/ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Nextflow 1
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fetchngs
fetchngs PublicForked from nf-core/fetchngs
Pipeline to fetch metadata and raw FastQ files from public databases
Nextflow
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sarek
sarek PublicForked from nf-core/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Nextflow
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chipseq
chipseq PublicForked from nf-core/chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline.
Nextflow
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scrnaseq
scrnaseq PublicForked from nf-core/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
Nextflow
Repositories
- sarek Public Forked from nf-core/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
latchbio-nfcore/sarek’s past year of commit activity - rnaseq Public Forked from nf-core/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
latchbio-nfcore/rnaseq’s past year of commit activity - diaproteomics Public Forked from nf-core/diaproteomics
Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
latchbio-nfcore/diaproteomics’s past year of commit activity - cageseq Public Forked from nf-core/cageseq
CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.
latchbio-nfcore/cageseq’s past year of commit activity - pgdb Public Forked from nf-core/pgdb
The ProteoGenomics database generation workflow creates different protein databases for ProteoGenomics data analysis.
latchbio-nfcore/pgdb’s past year of commit activity - reportho Public Forked from nf-core/reportho
nf-core pipeline for comparative analysis of ortholog predictions
latchbio-nfcore/reportho’s past year of commit activity - dualrnaseq Public Forked from nf-core/dualrnaseq
Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.
latchbio-nfcore/dualrnaseq’s past year of commit activity - molkart Public Forked from nf-core/molkart
A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)
latchbio-nfcore/molkart’s past year of commit activity - viralintegration Public Forked from nf-core/viralintegration
Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.
latchbio-nfcore/viralintegration’s past year of commit activity
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