ELPH-1.0.1 (untested)

ELPH/ELPH-1.0.1-1bl1.cygport

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+DESCRIPTION="Tool to find motifs in a set of DNA or protein sequences"
+HOMEPAGE="https://www.cbcb.umd.edu/software/${PN}/"
+SRC_URI="ftp:https://ftp.cbcb.umd.edu/pub/software/elph/${P}.tar.gz"
+SRC_DIR="${PN}"
+
+# https://pkgs.fedoraproject.org/gitweb/?p=elph.git
+PATCH_URI="elph-chris.patch"
+
+src_compile()
+{
+	cd ${B}
+	lndirs
+	cygmake -C sources
+}
+
+src_install()
+{
+	cd ${B}
+	dobin sources/elph.exe
+}
+
+DOCS="Readme.ELPH VERSION"

ELPH/README

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+ELPH
+------------------------------------------
+ELPH is a general-purpose Gibbs sampler for finding motifs in a set of
+DNA or protein sequences. The program takes as input a set containing
+anywhere from a few dozen to thousands of sequences, and searches
+through them for the most common motif, assuming that each sequence
+contains one copy of the motif.
+
+Runtime requirements:
+  cygwin-1.7.9-1
+  libstdc++6-4.5.3-2
+
+Build requirements:
+(besides corresponding -devel packages)
+  binutils-2.21.53-2
+  cygport-0.10.5-1
+  gcc4-core-4.5.3-2
+  gcc4-g++-4.5.3-2
+  make-3.81-2
+
+Canonical website:
+  https://www.cbcb.umd.edu/software/ELPH/
+
+Canonical download:
+  ftp:https://ftp.cbcb.umd.edu/pub/software/elph/ELPH-1.0.1.tar.gz
+
+-------------------------------------------
+
+Build instructions:
+  unpack ELPH-1.0.1-X-src.tar.bz2
+    if you use setup to install this src package, it will be
+	 unpacked under /usr/src automatically
+  cd /usr/src
+  cygport ./ELPH-1.0.1-X.cygport all
+
+This will create:
+  /usr/src/ELPH-1.0.1-X-src.tar.bz2
+  /usr/src/ELPH-1.0.1-X.tar.bz2
+
+-------------------------------------------
+
+Files included in the binary package:
+
+(ELPH)
+  /usr/bin/elph.exe
+  /usr/share/doc/Cygwin/ELPH.README
+  /usr/share/doc/ELPH/COPYRIGHT
+  /usr/share/doc/ELPH/LICENSE
+  /usr/share/doc/ELPH/README
+  /usr/share/doc/ELPH/Readme.ELPH
+  /usr/share/doc/ELPH/VERSION
+
+------------------
+
+Port Notes:
+
+----- version 1.0.1-1bl1 -----
+Initial release for Cygwin-1.7 by fd0 <https://d.hatena.ne.jp/fd0>
+

ELPH/setup.hint

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+category: Science
+requires: cygwin libstdc++6
+sdesc: "Tool to find motifs in a set of DNA or protein sequences"
+ldesc: "ELPH is a general-purpose Gibbs sampler for finding motifs in a set of
+DNA or protein sequences. The program takes as input a set containing
+anywhere from a few dozen to thousands of sequences, and searches
+through them for the most common motif, assuming that each sequence
+contains one copy of the motif."