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@labsyspharm

Laboratory of Systems Pharmacology @ Harvard

Reinventing the fundamental science underlying the development of new medicines and their use in individual patients.

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  1. ashlar ashlar Public

    ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

    Python 115 41

  2. mcmicro mcmicro Public

    Multiple-choice microscopy pipeline

    Nextflow 98 58

  3. scimap scimap Public

    Spatial Single-Cell Analysis Toolkit

    Python 67 23

  4. minerva-story minerva-story Public

    Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.

    HTML 49 14

  5. minerva_analysis minerva_analysis Public

    JavaScript 24 6

  6. cylinter cylinter Public

    An Interactive Image Segmentation Filter for Multiplex Microscopy

    Python 22 11

Repositories

Showing 10 of 151 repositories
  • ashlar Public

    ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

    labsyspharm/ashlar’s past year of commit activity
    Python 115 MIT 41 53 13 Updated Jul 23, 2024
  • minerva-author-ui Public

    Minerva Author is an authoring tool used to create Minerva narrated stories via selection of specific channel groupings and image views.

    labsyspharm/minerva-author-ui’s past year of commit activity
    JavaScript 4 MIT 5 2 4 Updated Jul 19, 2024
  • biospecimen-disease-research-terminology Public

    Clinical disease terminology for annotation of biospecimen records

    labsyspharm/biospecimen-disease-research-terminology’s past year of commit activity
    Python 0 MIT 1 1 0 Updated Jul 19, 2024
  • minerva-core-ui Public

    A microscopy viewer for non-experts

    labsyspharm/minerva-core-ui’s past year of commit activity
    TypeScript 0 MIT 2 10 2 Updated Jul 18, 2024
  • minerva-ui-mockup Public

    Mockup design with Improved UI/UX for creating Minerva stories

    labsyspharm/minerva-ui-mockup’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Jul 18, 2024
  • mcmicro-scanpy Public

    An MCMICRO module implementation of scanpy for clustering cells

    labsyspharm/mcmicro-scanpy’s past year of commit activity
    Python 1 5 0 1 Updated Jul 18, 2024
  • scimap Public

    Spatial Single-Cell Analysis Toolkit

    labsyspharm/scimap’s past year of commit activity
    Python 67 MIT 23 29 2 Updated Jul 15, 2024
  • beta-segmentinator Public
    labsyspharm/beta-segmentinator’s past year of commit activity
    Python 0 0 0 0 Updated Jul 11, 2024
  • okl-analysis Public
    labsyspharm/okl-analysis’s past year of commit activity
    R 0 0 0 0 Updated Jul 8, 2024
  • gater Public
    labsyspharm/gater’s past year of commit activity
    JavaScript 1 MIT 3 0 1 Updated Jul 1, 2024
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