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Max Planck Institute for Evolutionary Biology
- Ploen
- https://orcid.org/0000-0003-4308-9626
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awesome-pipeline Public
Forked from pditommaso/awesome-pipelineA curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
UpdatedSep 10, 2024 -
oggmapdb Public
A dashboard to explore and download orthomaps created with oggmap
MIT License UpdatedJul 31, 2024 -
dist2bionjs Public
Use stdin distance matrix to calculate bionjs
C GNU General Public License v2.0 UpdatedJul 12, 2024 -
bam2iupac Public
IUPAC FASTA extraction from BAM files to stdout
C++ MIT License UpdatedJun 24, 2024 -
literal-dists Public
Convert a FASTA alignment with ambiguous nucleotides to literal distance matrix
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OrthoFinder Public
Forked from davidemms/OrthoFinderPhylogenetic orthology inference for comparative genomics
Python GNU General Public License v3.0 UpdatedJun 1, 2024 -
TreeSwitchR Public
TreeSwitchR visualize phylogenetic trees along chromosomes in R
R Other UpdatedMay 14, 2024 -
snpless-nf Public
snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.
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MSA2dist Public
MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
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CRBHits Public
[CRBHits](https://github.com/kullrich/CRBHits) is a reimplementation of the Conditional Reciprocal Best Hit algorithm [crb-blast](https://github.com/cboursnell/crb-blast) in R.
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minipileup Public
Forked from lh3/minipileupSimple pileup-based variant caller
C UpdatedMar 31, 2024 -
bio-scripts Public
collection of scripts for bioinformatic analysis
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kortho Public
kortho calculates pairwise kmer jaccard distance between two peptide fasta files
GNU Affero General Public License v3.0 UpdatedMar 6, 2024 -
korthoCPP Public
korthoCPP calculates pairwise kmer jaccard distance between two peptide fasta files
C++ MIT License UpdatedMar 5, 2024 -
korthoR Public
korthoR calculates pairwise kmer jaccard distance between all sequences of an AAStringSet
HTML GNU General Public License v3.0 UpdatedMar 5, 2024 -
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orthomap Public archive
orthomap is a python package to extract orthologous maps (in other words the evolutionary age of a given orthologous group) from OrthoFinder/eggNOG results. Orthomap results (gene ages per orthogro…
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oggmap Public
oggmap is a python package to extract orthologous maps (short: orthomap or in other words the evolutionary age of a given orthologous group) from OrthoFinder/eggNOG results. Oggmap results (gene ag…
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published_phylomaps Public
Forked from drostlab/published_phylomapsA Collection of Published Phylostratigraphic Maps and Divergence Maps
UpdatedJul 9, 2023 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedJun 30, 2023 -
syntenet Public
Forked from almeidasilvaf/syntenetAn R package to infer and analyze synteny networks from protein sequences
R UpdatedJun 20, 2023 -
syntenyPlotteR Public
Forked from Farre-lab/syntenyPlotteRR package to draw syntenic plots in 3 different styles
R UpdatedJun 20, 2023 -
kakscalculator2 Public
Fork of the KaKs_Calculator2.0 project https://sourceforge.net/projects/kakscalculator2
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scTEI Public
add any phylogenetically based transcriptome evolutionary index (TEI) to single-cell data objects
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orthohmmer Public
Orthology inference based on hmmer
GNU General Public License v3.0 UpdatedMar 10, 2023 -
ColabFold Public
Forked from sokrypton/ColabFoldMaking Protein folding accessible to all!
Jupyter Notebook MIT License UpdatedDec 24, 2022 -
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tools-iuc Public
Forked from galaxyproject/tools-iucTool Shed repositories maintained by the Intergalactic Utilities Commission
HTML MIT License UpdatedOct 6, 2022