Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform GWAS/TWAS on complex trait.

Python command line tool for Multi-Trait Analysis of GWAS (MTAG)

R package for performing 2-sample MR using MR-Base database

Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.

Repo for the R package coloc

Materials for GCB535 at Penn.

Data objects for various sets of instruments

LD Score Regression (LDSC)