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krademaker/README.md

πŸ™‹πŸ»β€β™‚οΈ Hello, I am Koen Rademaker, a recent MSc Bioinformatics graduate from VU Amsterdam and currently working as a bioinformatician focusing on spatial transcriptomics in neurodevelopmental disorders at the Wellcome Sanger Institute in Omer Bayraktar's group. Previously, I conducted a MSc thesis project in Oliver Stegle's group (German Cancer Research Center in Heidelberg) in collaboration with Omer Bayraktar's group at Sanger.

🧠 My interests lie in computational biology, genetics and cell biology.

πŸ‘¨πŸ»β€πŸ’» I mostly work in Python and R, along with Bash / command-line scripting in HPC environments. I have also been trained in Java and SQL during my BSc, but that has been a while already. Learning Julia is still on my to-do list, but more urgent matters (i.e. fixing package versions in Conda) keep getting in the way.

🌱 I am currently diving deeper into machine learning algorithms as I see many opportunities for research questions in bioinformatics. Learning more about Bayesian statistics and Pythonic implementations is also something I am actively pursuing.

πŸ“« Reach me per e-mail, or visit my LinkedIn or ORCID pages.

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  1. tagmapAnalyseR tagmapAnalyseR Public

    tagmapAnalyseR package for transposon integration mapping (TagMap).

    R 2

  2. mitchellolislagers/cell_type_enrichment_pipeline mitchellolislagers/cell_type_enrichment_pipeline Public

    Shell 7 2

  3. msc-literature-review msc-literature-review Public

    LaTeX files for MSc Bioinformatics literature review project on multimodal single-cell sequencing.

    TeX

  4. CATS CATS Public

    Breast cancer tumor subtype classification using arrayCGH data.

    R 1