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26 Open 170 Closed
26 Open 170 Closed
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Issues list

required "-m/--model_path"
#209 opened Oct 30, 2024 by KANGYUlab
PEPPER-Margin-DeepVariant takes more cores than limit
#208 opened Jun 17, 2024 by martabaragli
1
Error in margin phase :No valid VCF entries found!
#207 opened May 24, 2024 by kch4221
Issue with docker GPU
#205 opened Apr 4, 2024 by martabaragli
phasing between R9 and R10 data
#204 opened Feb 28, 2024 by Yijun-Tian
Can pepper be used for short contigs?
#203 opened Jan 18, 2024 by zhan4429
Samples w/older guppy
#202 opened Jan 16, 2024 by dmjask
Do I have to train a model for specific organism ?
#200 opened Jan 8, 2024 by Modernism-01
Snp prediction accuracy is low in all difficult mapping areas
#199 opened Dec 22, 2023 by oranges7
1
Joint Genotyping Recommendation
#198 opened Nov 28, 2023 by SophieS9
ImportError with Singularity
#196 opened Oct 11, 2023 by aCoalBall
Root privileges
#195 opened Sep 29, 2023 by Meer9234
MARGIN using param file for older model
#194 opened Sep 15, 2023 by thainsCEB
Model for Guppy 6.5.7 SUP and/or Dorado 0.34
#193 opened Aug 18, 2023 by gchevignon
1
Dockerfile
#192 opened Aug 1, 2023 by yneuma
HiFi_variant_calling tutorial inconsistent
#190 opened Jun 2, 2023 by splaisan
resuming the run
#189 opened Jun 2, 2023 by Shruti-BioCode
1
Issues while trying use the singularity image
#187 opened May 18, 2023 by kiratalreja3
Deepvariant pepper settings for duplex calling
#186 opened Apr 18, 2023 by alvinwt
KeyError: "Unable to open object (object 'predictions' doesn't exist)"
#185 opened Apr 13, 2023 by hannahgoldswain
Installation issue with pytorch
#184 opened Apr 11, 2023 by noncodo
1
am I running this wrong?
#183 opened Apr 1, 2023 by shinlin77
7
Can you make pepper available on conda, please?
#182 opened Mar 22, 2023 by yuukiiwa
1
Disabling dawnsampling in pepper_margin_deepvariant ?
#178 opened Feb 6, 2023 by kiflu-23
4
Ambiguous IUPAC bases appearing in output VCF violate VCF Spec bug Something isn't working wontfix This will not be worked on
#167 opened Sep 7, 2022 by rickymagner
4
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