Stars
Integrated computational design of gene entanglements
metagenome simulation for targeted and reduced-representation sequencing
multiple GNOME terminals in one window
Python bindings for the BLAKE3 cryptographic hash function
Protein Annotation by Residue-Specific Enrichment: a site-based statistical method for interpretable protein function annotation
Collection of library stubs for Python, with static types
LucaProt: A novel deep learning framework that incorporates protein amino acid sequence and structure information to predict protein function.
Fully convolutional deep learning variant effect predictor architecture
A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
Binary-to-text encoding highly optimised for UTF-16
📚 Parameterize, execute, and analyze notebooks
SingularityCE is the Community Edition of Singularity, an open source container platform designed to be simple, fast, and secure.
Pod5: a high performance file format for nanopore reads.
a tool for simulating nanopore raw signal data
🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.
LoFreq Star: Sensitive variant calling from sequencing data
Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client