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The computational platform u-signal3D defines a shape-invariant representation of the spatial scales of molecular organization at the cell surface, enabling comparison and machine-learning of signa…
O2VAE: a model for orientation-invariant representation learning (phenotyping) in cell biology data
Open source implementation of AlphaFold3
Official code repository for the paper: “GenSDF: Two-Stage Learning of Generalizable Signed Distance Functions”
PyAero is an open-source airfoil contour analysis and CFD meshing tool.
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
R implementation of MULTI-seq sample classification workflow
Qwen2-VL is the multimodal large language model series developed by Qwen team, Alibaba Cloud.
computer vision models for single-cell phenotyping
An open-source Python library for the analysis of fluorescence lifetime and hyperspectral images using the phasor approach.
A community-maintained Python framework for creating mathematical animations.
MorphoGenie - Unsupervised Deep Learning Framework for GENeralizable, Interpretable/Explainable Single-Cell Morphological Profiling
Segment images by pixel classification based on pre-trained convolutional layer feature extraction
repository associated to our pipeline for lipid dynamics
Retrieve and summarize bioRxiv preprints with a local LLM using ollama
A library for scientific machine learning and physics-informed learning
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
Relational piecewise-linear overapproximations of multi-dimensional functions
code to run EPInformer for gene expression prediction and gene-enhancer links prioritization
HGX is a multi-purpose, open-source Python library for higher-order network analysis
IEEE Micromouse DeCal Lab 7: Floodfill
The 2024 edition of The Nature of Code with p5.js. Includes Notion workflow and build system.