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Scripts for analysis of autophagy-related structures in cryo-electron tomography data.
FiPy is a Finite Volume PDE solver written in Python
Image reading, metadata management, and image writing for Microscopy images in Python
DSPy: The framework for programming—not prompting—foundation models
A SAM-based model for instance segmentation of images of grains
Examining how large language models (LLMs) perform across various synthetic regression tasks when given (input, output) examples in their context, without any parameter update
Official repository for SIMMETRIC, a robotic surgery feedback system for next-generation resident training.
Measures the shape properties of the object boundaries and displays the curvature.
🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.
Obsidian Vault Backup; Notes on ML Articles/Books/Lectures
💫 Industrial-strength Natural Language Processing (NLP) in Python
Multilingual Sentence & Image Embeddings with BERT
Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
The "you only glance once" object detection model
Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection failure, and (3) capture particle merging and splitting even…
Biological foundation modeling from molecular to genome scale
The known BioVoxxel Toolbox functions now improved for 2D and 3D images
Segment Anything for Microscopy
A minimal GPU design in Verilog to learn how GPUs work from the ground up
DeepCAD-RT: Real-time denoising of fluorescence time-lapse imaging using deep self-supervised learning
compile models and perform identification analysis and optimal experimental design
Fast calculation of contact angles in tomography images using deep learning
VISION is a sophisticated software tool specifically designed to analyze and process biological and microscopic images.