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A database opsin data and machine-learning models to predict phenotype.
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
PhyML -- Phylogenetic estimation using (Maximum) Likelihood
deepBreaks , a computational method, aims to identify important changes in association with the phenotype of interest using multi-alignment sequencing data from a population.
Automatically exported from code.google.com/p/figtree
Global Biotic Interactions provides access to existing species interaction datasets
SQL scripts for visual physiology database