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A database opsin data and machine-learning models to predict phenotype.

Jupyter Notebook 3 Updated Jul 25, 2024

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

Python 3,029 591 Updated Feb 7, 2024
Python 983 103 Updated Jul 25, 2024

Data intensive science for everyone.

Python 1,349 982 Updated Jul 26, 2024

PhyML -- Phylogenetic estimation using (Maximum) Likelihood

C 173 61 Updated Jul 18, 2024
Jupyter Notebook 6 7 Updated Jul 13, 2018

TreeSAP: Tree SAmpling under Phylogenetic models

Python 3 Updated Jul 1, 2019

Ancestral Sequence Reconstruction in Python

Python 11 8 Updated May 9, 2019

deepBreaks , a computational method, aims to identify important changes in association with the phenotype of interest using multi-alignment sequencing data from a population.

Jupyter Notebook 8 3 Updated Jun 25, 2024
Jupyter Notebook 2 14 Updated Mar 27, 2023

Automatically exported from code.google.com/p/figtree

Java 378 103 Updated Apr 1, 2024

Global Biotic Interactions provides access to existing species interaction datasets

Java 120 17 Updated Jul 24, 2024

The 2nd Gen PCB for the WALLE Capstone 2018

SMT 1 Updated Jun 20, 2018

SQL scripts for visual physiology database

Jupyter Notebook 1 1 Updated Oct 24, 2023