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1. 3D-genome-risk-prediction 3D-genome-risk-prediction Public

   [ACM-BCB 2023 Oral Presentation] Official repository of "Deep learning-based survival prediction using DNA methylation-derived 3D genomic information"

   Python 8

2. consensus-3D-genome-inference consensus-3D-genome-inference Public

   Python implementation of Fortin and Hansen (2015). Inferring a tissue type-specific consensus 3D genome from DNA methylation data only.

   Jupyter Notebook

3. metheor metheor Public

   Forked from dohlee/metheor

   Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments

   Rust

4. simulate_WGBS simulate_WGBS Public

   Sampling sequencing reads, running sherman and running bismark. Resulting bam file is used as simulated WGBS reads.

   Perl 1