This page contains information relevant to the NEU workshop for MED-oligotyping and Anvi'o held at the Marine Science Center Nahant, MA

Agenda:

Day 1: Mon Oct 30

9:00 – 10:00 MED-Oligotyping discussion

10:00 – 11:00 Unix crash course and tutorial

11:00 – 12:00 real world examples. How to interpret MED output

12:00 – 1:00 Continue to work through our example data and eat lunch

1:00 – 2:00 Introduction to Anvi’o

2:00 – 3:00 Creating a contigs database and loading it with data

3:00 – exhaustion Anvi’o metagenomics workflow – binning, refining, and summary

Day 2: Tues Oct 31

9:00 – 12:00 Review of day1 and any sticky points.
Analyzing SNVs

12:00 – 1:00 lunch and thoughts on SNVs

1:00 – 2: 00 Pangenomics

2:00 – 3:00 Phylogenomics

3:00 – 4:00 Combining ‘omics Data

4:00 – 5:00 Interactive Data Types

5:00 – exhaustion Anvi server