Utilities for automating bgc (Bayesian genomic cline) file prep, analysis, and results plotting

This is the initial development release of bgc_tools, a set of utilities for automating bgc (Bayesian genomic cline) file prep, analysis, and results plotting, written and developed by Justin Bagley. This software package aids analyses of hybridization using the bgc program (Gompert and Buerkle 2012), which uses MCMC to estimate parameters of the Bayesian genomic cline model from genomic SNP/genotype data. This package is under active development but the release is stable.

See here.

Recommended:

1. Development (cutting edge) Homebrew install:

# Install:
brew tap justincbagley/homebrew-tap ;
brew update ;
brew install bgc_tools ;

All code within the bgc_tools repository is available "AS IS" under a generous 3-Clause BSD license. See the LICENSE file for more information.

Should you cite bgc_tools? See https://github.com/mr-c/shouldacite/blob/master/should-I-cite-this-software.md.

If you use scripts from this repository as part of your published research, I require that you cite the repository as follows (also see upcoming DOI information):

• Bagley, J.C. 2020. bgc_tools v0.1.0. GitHub repository, Available at: https://github.com/justincbagley/bgc_tools.

Alternatively, please provide the following link to this software repository in the main text of your manuscript:

• https://github.com/justincbagley/bgc_tools

• Gompert, Z. and Buerkle, C.A., 2012. bgc: Software for Bayesian estimation of genomic clines. Molecular Ecology Resources, 12(6), 1168-1176.

December 19, 2020

Justin C. Bagley, Jacksonville, AL, USA