Produce reproducible, pretty genome coverage plots using highly customizable layout and coverage normalization, batch correction etc.

Generate IGV style locus tracks from bigWig files in R

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

A new kind of Progress Bar, with real-time throughput, ETA, and very cool animations!

🎯 ChIP peak Annotation, Comparison and Visualization

Posit Cheat Sheets - Can also be found at https://posit.co/resources/cheatsheets/.

Ultraperformant reimplementation of SICER

RStudio add-in to make plots interactively with ggplot2

Hands on for the ChIP-seq tutorial at the Roscoff EBAI2019 school

Tools (written in C using htslib) for manipulating next-generation sequencing data

A fast and sensitive gapped read aligner

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

The hackable text editor

MACS -- Model-based Analysis of ChIP-Seq

Data intensive science for everyone.

A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

Trinity RNA-Seq de novo transcriptome assembly

Statistical Analysis of RNA-Seq Tools

An automated post sequencing data processing pipeline for Illumina HiSeq

R package to pre-process, analyze and visualize single-cell qPCR data