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DONE: * Fixed README file extension. TODO: * Deal with overlapping windows (via phasing). * Consider truncating L for numerical purposes. * Case where N=1, then b=0? * Case where MLE doesn't exist, i.e. when log-likelihood is not concave?
jordiabante · Jan 15, 2019 · e84896d · e84896d
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diff --git a/README → README.md b/README → README.md
@@ -9,10 +9,6 @@ A `julia` package for allele-specific methylation analysis.
 * `julia v1.0.0` or greater.
 * `git`.
 
-```
-Give examples
-```
-
 ### Installing
 
 `JuliASM` and dependencies can be installed via the following command:

diff --git a/src/juliASM_bioinformatics.jl b/src/juliASM_bioinformatics.jl
@@ -576,7 +576,6 @@ function run_asm_analysis(bam1_path::String, bam2_path::String, vcf_path::String
  mi = comp_mi(n,eta1,eta2)
  push!(bG_mi_records,(chr,featSt,featEnd,mi))
  end
-
  end
  # Add values to respective output BigWig files after each chr
  bG_mml1_records = write_bG(bG_mml1_records, bG_mml1_path)