A collection of Jupyter notebooks that follow my learning from textbooks

graph database to facilitate analysis and comparison of ARG databases and metagenomic calls

A Python library for automatically training a Maxout Network

Statistical analysis of sequins in C++ and R

Experimental metagenomic workflow

Base workflow for setting up OTU analysis from Illumina fastq(s)

Parallel d2* Wrapper of VirHostMatcher

Fizkin fork optimized for performance and easy integration into automated runs

FAST Heuristics for querying fasta/fastq files

A python tool for creating static visualizations of NGS reference read pileups

A workflow that accelerates RGI ARG-like sequence identification

A pyFlow extension for automated scientific workflows on the Flux cluster

Python Click-based CLI for transferring to and from Box accounts

A python library for dynamic genomic sequence compression

simple dRep runner wrapper script with automated dependency build

March Mania Machine Learning Experiments

configuration files for slurm cluster testing grounds

Markdown Neural Network (NN) tutorials created for learning purposes. They could be beneficial for those wishing to learn about NN.

A place to keep some scripts I routinely use

Neural Network Tutorials

A base terminal application that can easily be extended

A potential research avenue prompted by observations in a literature review conducted in Ubiquitous Computing course at CMU