tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies

USB WiFi Adapter Information for Linux

Gene Set Enrichment Analysis in Python

A conda-forge distribution.

PyTorch version of Stable Baselines, reliable implementations of reinforcement learning algorithms.

A dictionary that allows attribute-style access.

Take output of mageck and drugz to produce interactive Dash charts.

Data-driven aggregation of ranked and unranked lists

A simple and efficient tool to parallelize Pandas operations on all available CPUs

Python version of CRISPRcleanR: An R package for unsupervised identification and correction of gene independent cell responses to CRISPR-cas9 targeting

Repository for "Multilayered VBC-score predicts sgRNAs that efficiently generate loss-of-function alleles" Michlits et al. Nature Methods 2020 Jun; 17: 708-716

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

DRUGZ software

Python3 teaching materials for basic introduction to Python (2 days)

Python3 teaching materials for data science (2 days)

Scripts for processing and predicting CRISPR/Cas9-generated mutations

pure python code for rank aggregation/voting

Official git repository for Biopython (originally converted from CVS)

Analysis package for processing counts from genome-wide CRISPR/Cas9 screens

phred quality conversion to and from float and log space