contains the data analysis workflow used in the report. E.g creation of naively created loops and loops under constraints like motive directionality and length. Furthermore, a workflow to check if particular ctcf loop types cross topological domain borders.

workflow to check for enrichment of particular tfs within ctcf mediated loops. ANOVA and Tukeyhsk

mainly a function like bedtools shuffle but for GRanges objects.

contains object containing the ctcf chip-seq bs but with motif and motif orentation.

object containing simulated loops.

object containing simulated ctcf loops but under constraints like loop length, motif and motif direcrtionality.