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Achievements

Achievement: YOLOAchievement: QuickdrawAchievement: StarstruckAchievement: Arctic Code Vault ContributorAchievement: Pull Shark

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@Christensen-Lab-Dartmouth
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  • WSI-GTFE Public

    Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.

    Jupyter Notebook 25 10 MIT License Updated Aug 17, 2020

  • CLAM Public

    Forked from mahmoodlab/CLAM

    Data Efficient & Weakly Supervised Computational Pathology on Whole Slide Images

    Python GNU General Public License v3.0 Updated Jun 14, 2020

  • MethylNet Public

    Modular framework for deep learning predictions on methylation data.

    HTML 5 3 MIT License Updated Jun 2, 2020

  • airlab Public

    Forked from airlab-unibas/airlab

    Image registration laboratory for 2D and 3D image data

    Python Apache License 2.0 Updated May 12, 2020

  • deep-review Public

    Forked from greenelab/deep-review

    A collaboratively written review paper on deep learning, genomics, and precision medicine

    HTML 1 Other Updated Mar 9, 2020

  • PreliminaryGenerativeHistoPath Public

    1 MIT License Updated Mar 6, 2020

  • util Public

    Forked from stevekm/util

    Utility modules for Python

    Python GNU General Public License v3.0 Updated Dec 16, 2019

  • chocolate Public

    Forked from AIworx-Labs/chocolate

    A fully decentralized hyperparameter optimization framework

    Python 1 BSD 3-Clause "New" or "Revised" License Updated Aug 7, 2019

  • PolyCRACKER-Unofficial-Mirror Public

    A robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-5828-5

    Python 3 2 Other Updated Aug 5, 2019

  • pytorch_cluster Public

    Forked from rusty1s/pytorch_cluster

    PyTorch Extension Library of Optimized Graph Cluster Algorithms

    Cuda 1 MIT License Updated Jul 13, 2019

  • hypopt Public

    Forked from cgnorthcutt/hypopt

    A Python ML package for parallelized hyper-parameter optimization using a validation set (not cross validation).

    Python 2 Other Updated Apr 26, 2019

  • PyMethylProcess Public

    Forked from Christensen-Lab-Dartmouth/PyMethylProcess

    Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.

    Python 3 MIT License Updated Apr 21, 2019

  • Datasets Public

    Repository to store datasets for variety of my publicly released packages.

    1 MIT License Updated Apr 8, 2019

  • pytorch_geometric Public

    Forked from pyg-team/pytorch_geometric

    Geometric Deep Learning Extension Library for PyTorch

    Python 1 MIT License Updated Mar 26, 2019

  • SimpleHTTPAuthServer Public

    Forked from by321/SimpleHTTPAuthServer

    Python SSL server using Basic auth and SimpleHTTP. extended and imported from gist: https://gist.github.com/fxsjy/5465353

    Python MIT License Updated Mar 8, 2019

  • PlotlyPresentationDemo Public

    HTML 1 Updated Mar 1, 2019

  • meffil Public

    Forked from perishky/meffil

    Efficient algorithms for analyzing DNA methylation data.

    HTML 1 Artistic License 2.0 Updated Dec 11, 2018

  • JoshuaTree2 Public

    High throughput scaffolding and phylogenetic inference pipeline from syntenic blocks.

    Python 2 MIT License Updated Dec 8, 2018

  • pytorch_practice Public

    Some practice scripts from earlier this year

    1 Updated Dec 3, 2018

  • netgan Public

    Forked from danielzuegner/netgan

    Implementation of the paper "NetGAN: Generating Graphs via Random Walks".

    Jupyter Notebook 1 MIT License Updated Oct 12, 2018

  • tutorials Public

    Forked from pytorch/tutorials
    Python 1 BSD 3-Clause "New" or "Revised" License Updated Sep 21, 2018

  • gae-pytorch Public

    Forked from zfjsail/gae-pytorch

    Graph Auto-Encoder in PyTorch

    Python 1 MIT License Updated Aug 12, 2018

  • UnrealAI Public

    Exploring Fun and Useful AI Projects with Friends

    Jupyter Notebook 10 3 Updated Jul 1, 2018

  • GraphRNN Public

    Forked from snap-stanford/GraphRNN
    Python 1 MIT License Updated Jun 7, 2018

  • circos_dropper2 Public

    Python 2 1 Updated May 17, 2018

  • PanHipmer_dev Public

    Python 2 Updated Apr 17, 2018

  • JupyterTests Public

    HTML 1 Updated Apr 6, 2018

  • ScaffolderPipeline Public

    Highly parallelized scaffolder, turns scaffold level genomes into chromosomes via synteny

    Python 4 2 Updated Apr 5, 2018

  • JoshuaTree Public

    Using pairwise synteny for high throughput genomics, multiple sequence alignment, population genetics, and phylogeny

    Python 2 Updated Mar 10, 2018

  • CircosDropper Public

    Automated visualization of pairwise synteny

    Python 2 Updated Jan 3, 2018