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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedNov 8, 2023 -
tools-iuc Public
Forked from galaxyproject/tools-iucTool Shed repositories maintained by the Intergalactic Utilities Commission
HTML MIT License UpdatedMar 7, 2023 -
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tools-galaxyp Public
Forked from galaxyproteomics/tools-galaxypGalaxy Tool Shed repositories maintained and developed by the GalaxyP community
JavaScript MIT License UpdatedNov 22, 2022 -
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ScanNeo Public
Forked from ylab-hi/ScanNeoA pipeline for identifying indel derived neoantigens using RNA-Seq data
Python Other UpdatedAug 29, 2022 -
FragPipe Public
Forked from Nesvilab/FragPipeA cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data
Java GNU General Public License v3.0 UpdatedMar 11, 2022 -
galaxy Public
Forked from galaxyproject/galaxyData intensive science for everyone.
Python Other UpdatedDec 29, 2021 -
metaquantome Public
Forked from galaxyproteomics/metaquantomePython Apache License 2.0 UpdatedFeb 22, 2021 -
training-material Public
Forked from galaxyproject/training-materialA collection of Galaxy-related training material
HTML MIT License UpdatedFeb 15, 2021 -
usegalaxy-eu-tools Public
Forked from usegalaxy-eu/usegalaxy-eu-toolsList of tools included in https://usegalaxy.eu
Python MIT License UpdatedApr 10, 2020 -
transIndel Public
Forked from cauyrd/transIndelIndel caller for DNA-seq or RNA-seq
Python GNU General Public License v3.0 UpdatedApr 2, 2020 -
mztosqlite Public
Convert proteomics data files into a SQLite database
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prosit Public
Forked from kusterlab/prositProsit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful for your research, please cite "Gessulat, Schmidt et al. 2019"…
Python Apache License 2.0 UpdatedNov 19, 2019 -
graph2pro-var Public
Forked from COL-IU/graph2pro-varC++ GNU General Public License v3.0 UpdatedJul 29, 2019 -
compomics-utilities Public
Forked from compomics/compomics-utilitiesOpen-source java library for computational proteomics
Java UpdatedFeb 23, 2018 -
eggnog-mapper Public
Forked from eggnogdb/eggnog-mapperFast genome-wide functional annotation through orthology assignment
Python GNU General Public License v2.0 UpdatedJul 19, 2017 -
proBAMconvert Public
Forked from Biobix/proBAMconvertproBAMconvert, a conversion tool for peptide identification files (MzIdentML,pepXML,mzTAB) to the proBAM format
Python UpdatedMar 14, 2017 -
peptide-shaker Public
Forked from compomics/peptide-shakerInterpretation of proteomics identification results
Java UpdatedFeb 15, 2017 -
psm-eval Public
Forked from jmchilton/psm-evalPython application and framework for reanalyzing peptide-spectrum-matches (PSMs).
Python UpdatedJan 18, 2017 -
Morpheus Public
Forked from cwenger/MorpheusMorpheus mass spectrometry–based proteomics database search algorithm
C# UpdatedAug 23, 2016 -
mayu Public
Forked from proteomics-mayu/mayuMayu - Protein Identification False Discovery Rates
Perl UpdatedJul 7, 2016 -
twobitreader Public
Forked from benjschiller/twobitreaderA fast python class for reading 2-bit files (used by UCSC genome browser)
Python Artistic License 2.0 UpdatedApr 21, 2016 -
download_store Public
Universal storage for tarballs and binaries that are not guaranteed to exist for a long time. This reposititory is mainly used to enable reproducibility within Galaxy and the Galaxy Tool Shed.
UpdatedDec 29, 2015 -
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galaxytools-1 Public
Forked from bgruening/galaxytools🔬📚 Galaxy Tool wrappers
Python UpdatedMay 13, 2015 -
tools-devteam Public
Forked from galaxyproject/tools-devteamRepository encapsulating a set of Galaxy tools mostly written by the Galaxy Team.
Python UpdatedJan 8, 2015 -
cufflinks Public
Forked from cole-trapnell-lab/cufflinksC++ Boost Software License 1.0 UpdatedDec 22, 2014 -
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