Stars
This is an automatic testing script in order to QA data imported from the GDC to the Xena browser.
main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datasets, https://cellbrowser.rtfd.org
Foundation Medicine XML file to cBioPortal staging file converter.
Questions and answers about TOPmed, GTEx, and AGR resources.
Format specifications for communicating trajectory information.
Software for exploration of gene expression data from single-cell RNA sequencing.
An interactive explorer for single-cell transcriptomics data
List of tools and resources related to the 10x Genomics GEMCode/Chromium system
starfish: unified pipelines for image-based transcriptomics
Extract, transform and load GDC data onto UCSC Xena
The UCSC version of the VIPER package for bioinformatics and systems biology
A library for navigating and downloading from the GDC API
react template for client-side development
Graph theory (network) library for visualisation and analysis