Stars
An HPC cluster-based pipeline for atlas creation, voxel- and label-based analysis (and more!)
fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/en/stable/
An isotropic EPI resting-state fMRI database of the rat brain
Multimodal Surface Matching with Higher order Clique Reduction: Mac OS and Linux binaries
The actual pipeline code, based on hcp, for non-human-primates - sp macaques.
Gradient Unwarping in Python
Processing pipelines for the HCP
Enhancements of HCP Pipelines for non-human primates
U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu
modified ANTs shell scripts adapted to the mouse