Code and data for the paper:
"Phylotranscriptomics illuminates the placement of whole genome duplications and gene retention in ferns " by Jessie A. Pelosi, Emily H. Kim, W. Brad Barbazuk, and Emily B. Sessa. The publication can be found here.
Code Written By: Jessie Pelosi and Emily Kim
Last Updated: July 18, 2022
This repository is split into the following folders with corresponding markdowns:
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Assembly and Annotation (Markdown)
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Phylotranscriptomics (Markdown)
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Repeats (Markdown)
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Whole Genome Dups (Markdown)
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Data
Each folder contains a markdown file for analyses and any relevant scripts/files for those analyses.
All data are provided in the Data folder.