Fulgor is a fast and space-efficient colored de Bruijn graph index.

Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

Official software repository of S. Bruch, F. M. Nardini, C. Rulli, and R. Venturini, "Efficient Inverted Indexes for Approximate Retrieval over Learned Sparse Representations". Long Paper @ ACM SIG…

Iterate over minimizers of a DNA sequence

The book "Performance Analysis and Tuning on Modern CPU"

AssemblyLine 4: File triage and malware analysis

Reference implementations of minimizer schemes to go with the mod-minimizers paper.

High throughput suffix array searching

A modular, reusable university course for Rust

Optimal distance lower bound k-mer sampling.

A comparative, extendible benchmarking suite for C and C++ hash-table libraries.

Classifier for metagenomic sequences using FM-index with run-block compressed BWT.

Multi-MUM and MEM finding across collections of sequences

Benchmarks of Kaminari competitors

A catalogue of Rust design patterns, anti-patterns and idioms

Library containing useful building blocks for bioinformatics software

Implementation of "Efficient Multi-vector Dense Retrieval with Bit Vectors", ECIR 2024

A high-performance, concurrent hash table

Essential C++ utilities.

Implementation of a Backpack Quotient Filter

A Rust library providing fully dynamic sets of k-mers with high locality

Fast and memory efficient c++ flat hash map/set

A fast & densely stored hashmap and hashset based on robin-hood backward shift deletion

Code and software for minimum-decycling-set-based minimizer orders

Modern C++ Programming Course (C++03/11/14/17/20/23/26)

Rust implementations of succinct data structures

Fast and cache-efficient full-text pangenome index

PTRHash minimal perfect hash function, based of PTHash