Let the robot do your GO enrichments!

Small python script based on selenium to query the webgestalt web interface. Returns a GO enrichment given a set of entrez ids and a background list.

Contributions and feature requests are welcome.

1. Register with webgestalt
2. mv config.py.example config.py
3. Set your email adress in config.py

An example is included in test/

test/rejected.txt contains the query genes.

27
91
141
154
324
332
387
390
408
551

test/background.txt has the same form as above and contains the background genes.

>>> from webgestalt.runner import run
>>> rejected = 'test/rejected.txt'
>>> run(rejected, background, folder='test', name='results')

This project is licensed under the MIT licence.