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1. cFDR-common-controls cFDR-common-controls Public

   This repository contains R functions to compute the 'Conditional False Discovery Rate', a method to analyse genome-wide association studies (GWAS) for related diseases originally proposed by Andrea…

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2. cfdr cfdr Public

   Implements conditional false-discovery rate hypothesis testing, used to perform high-dimensional hypothesis tests. Requires a set of summary statistics in an experiment of interest, and 'levers' on…

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3. subtest subtest Public

   A package for testing for differential genetic basis between two putative disease subtypes.

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4. SPARRAv4 SPARRAv4 Public

   Public repository for code used in manuscript on SPARRA version 4

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5. cfdr_control_pipeline cfdr_control_pipeline Public archive

   Pipeline for generation of all plots and results in paper 'Accurate error control in high dimensional association testing using conditional false discovery rates' by James Liley and Chris Wallace (…

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6. cfdr_estimation_pipeline cfdr_estimation_pipeline Public archive

   Pipeline for generation of all plots and results in paper 'New estimators for conditional false discovery rates improve power and smoothness' by James Liley and Chris Wallace (to be submitted)

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