*.py files are scripts that can run from the command line in your local environment
*.cwl.json files are CWL tools/workflows that can be used on Seven Bridges platforms
input.txt is a simple file with a DNA sequence that can be processed with transcribe_argparse.py and then translate_argparse.py

Use the included Dockerfile to run the scripts in the precise environment they were tested in.

Input using stdin: python transcribe_argparse.py
Read from file: python transcribe_argparse.py -d input.txt
Pipe stdout of transcribe to stdin of translate: python transcribe_argparse.py -d input.txt | python translate_argparse.py