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iwatobu
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Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
This repository contains slides from some of the classes I have taught in my career. The repository will be updated from time to time. If you are interested in the .tex files and other material (e.…
Data analysis scripts for "Atlas of plasma NMR biomarkers for health and disease in 118,461 individuals from the UK Biobank".
GTEx & TOPMed data production and analysis pipelines
GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline
R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"
Code supporting analyses in paper on fine-mapping AD loci
PhenomeXcan: mapping the genome to the phenome through the transcriptome
Graph-linked unified embedding for single-cell multi-omics data integration
A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline
Fine-mapping pipeline for Open Targets Genetics
Colocalisation pipeline for Open Targets Genetics
Harmonise GWAS summary statistics against a reference VCF
Manuscript code for our paper: bit.ly/bloodcellgwas
A project to bootstrap EMR clusters with Hail installed
SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.
Code for GBMI trans-ancestry proteome Mendelian randomization satellite paper
Converts profiling output to a dot graph.
dpeerlab / PhenoGraph
Forked from jacoblevine/PhenoGraphSubpopulation detection in high-dimensional single-cell data
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"