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Liver tumor CT scan segmentation (STILL IN PROGRESS)

In this project I've built a UNET model for liver tumor segmentation via PyTorch.
The dataset: Liver Tumor Segmentation.
For now it's just a jupyter notebook with:

  • exploration of the initial dataset
  • creation of new dataset of 2D images and their target masks
  • defining Datasets and Dataloaders for our model
  • defining UNET model
  • experiments with fresh new UNET model
  • experiments with small sanity-check dataset on fresh new UNET model

After understanding that this problem will take too much time to train a model from scratch, I've decided my next steps will be:

  • refactor the code
  • use pretrained ResNet layers for UNET's encoder
  • train it on the whole dataset of scans
  • maybe more experiments with loss function and over/undersampling duo to big class imbalance and importance of class 2

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Liver tumor CT scan segmentation via PyTorch

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