Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Upgrade to 0.2.3 #21

Merged
merged 54 commits into from
Mar 26, 2016
Merged

Upgrade to 0.2.3 #21

merged 54 commits into from
Mar 26, 2016

Conversation

ThierryO
Copy link
Collaborator

No description provided.

ThierryO and others added 30 commits December 22, 2015 15:06
@ThierryO
imputeINLA() can be replaced by impute()
6a71aef
@ThierryO
imputedTotal() can be replaced by aggregate_impute()
cadcac1
@ThierryO
summarizeImputationGLM() can be replaced by model_impute()
2a9dbb9
@ThierryO
Merge pull request #13 from ThierryO/master
0e232e0 
Bring develop branch up to date
@ThierryO
Merge pull request #14 from ThierryO/deprecated
69533b3 
Deprecated
@ThierryO
add a deprecated note to imputedTotals and ignore code coverage
05063e6
@ThierryO
remove testMethods()
8e0f798
@ThierryO
add a note to the deprecated summarizeImputationGLM() and remove it f…
19a9806 
…rom the code coverage
@ThierryO
add a note to the deprecated summarizeImputationGLMMnb() and exclude …
87ec87e 
…it from code coverage
@ThierryO
deprecate imputeUnderhill() and exclude it from code coverage
3120769
@ThierryO
update coding style
8ad85d2
@ThierryO
deprecate imputeUnderhillAltered() and exclude it from code coverage
d94642c
@ThierryO
add a note to the deprecated imputeINLA and exclude it from code cove…
2f7e8d2 
…rage
@ThierryO
deprecate imputeINLAfit() and exclude it from code coverage
f0951a8
@ThierryO
deprecate imputeTruth() and exclude it from code coverage
559333f
@ThierryO
fix typo in README
8127dd2
@ThierryO
Merge pull request #15 from ThierryO/obsolete
ed0b87e 
Mark older functions as deprecated
@ThierryO
update math expressions in vignette to match paper
1c92627
@ThierryO
fix typo in vignette
7f26458
@ThierryO
add some explanations to the models used for imputation
1053ea2
@ThierryO
bugfix: import starts_with from dplyr
c7914dc
@ThierryO
update unit test to changes in dplyr
fc21056
@ThierryO
add examples with glmer() and glm.nb() to the vignette
6556588
@ThierryO
Examples use relative indices
c13fe60
@ThierryO
generateData() gains a mean.period.phase argument
48d2f3f
@ThierryO
bump package version and date
dc87aff
@ThierryO
fix typos in vignette
687a8a5
@ThierryO
install dplyr from github
63225a5
@ThierryO
Merge pull request #16 from ThierryO/vignette
002d5f3 
More work on the vignette
@ThierryO
use steps from inbobmk instead of jimhester
0c5ae78
ThierryO and others added 24 commits March 14, 2016 13:37
@ThierryO
calculate aggregate_impute() outside expect_is()
e75e749
@ThierryO
place aggregate_impute() outside it()
86327f9
@ThierryO
install covr and lintr packages because inbobmk/r-coverage and inbobm…
972d3bf 
…k/r-lint assume that they are installed
@ThierryO
add variables to paper_trim.rda and resave rda files
d05e80e
@ThierryO
list MASS only once in DESCRIPTION
57c157a
@ThierryO
ignore local wercker build leftovers
0730e4b
@ThierryO
ungroup() results if not the grouping columns will remain in the dataset
53e87b8
@ThierryO
bugfix: import ungroup() from dplyr
dbfedcc
@ThierryO
update badges in README
607f2d9
@ThierryO
update installation instructions
693f96e
@ThierryO
use r-base image instead of hadleyverse
0babdd5
@ThierryO
devtools is missing in r-base
e001b3f
@ThierryO
use small wercker badges in README
f688917
@ThierryO
Merge pull request #17 from ThierryO/bugfix
6869608 
Bugfix in vignette
@ThierryO
merge changes in develop
c8c976d 
Merge branch 'develop' into ci

# Conflicts:
#	wercker.yml
@ThierryO
INLA requires the sp package
6a5d2e6
@ThierryO
all dependencies are available in inbobmk/r-multimput
ee39a81
@ThierryO
Merge pull request #18 from INBO-BMK/ci
cdd7db0 
Update continuous integration
@ThierryO
add deploy targets
0512b75
@ThierryO
Merge pull request #19 from INBO-BMK/deploy
05c5fe5 
add deploy targets for docker image
@ThierryO
use correct badge for development branch
5989db5
@ThierryO
update DESCRIPTION
d02fb76
@ThierryO
add link to docker image to README
feaac0b
@ThierryO
Merge pull request #20 from INBO-BMK/readme
586162b 
Update README and DESCRIPTION
@codecov-io
Copy link

Current coverage is 25.05%

Merging #21 into master will decrease coverage by -12.85% as of 586162b

@@            master     #21   diff @@
======================================
  Files           20      11     -9
  Stmts          744     423   -321
  Branches         0       0       
  Methods          0       0       
======================================
- Hit            282     106   -176
  Partial          0       0       
+ Missed         462     317   -145

Review entire Coverage Diff as of 586162b

Uncovered Suggestions

  1. +11.82% via R/impute_inla.R#9...58
  2. +10.88% via R/impute_glmerMod.R#45...90
  3. +10.41% via R/model_impute.R#74...117
  4. See 7 more...

Powered by Codecov. Updated on successful CI builds.

@ThierryO ThierryO merged commit 711514e into master Mar 26, 2016
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
2 participants
@ThierryO @codecov-io