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imodpasteur

Imaging and Modeling lab

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  1. lutorpy lutorpy Public

    Forked from scoder/lupa

    Use torch in python for deep learning.

    Python 234 28

  2. ANNA-PALM ANNA-PALM Public

    Accelerating Single Molecule Localization Microscopy with Deep Learning

    Python 49 14

  3. ZOLA-3D ZOLA-3D Public

    Zernike Optimized Localization Algorithm for 3D single molecule localizations

    Java 13 3

  4. Brightfield-Drift-Correction-3D Brightfield-Drift-Correction-3D Public

    Acquire bright field images along with the super resolution data and use it to track drift in 3D with nanometer precision!

    Python 9

  5. pySPIRALTAP pySPIRALTAP Public

    Sparse Poisson Intensity Reconstruction ALgorithms

    Jupyter Notebook 7 4

  6. CompressedSensingMicroscopy3D CompressedSensingMicroscopy3D Public

    Reconstruction notebooks for the paper "Simple 3D compressed sensing scheme for faster and less phototoxic fluorescence microscopy imaging"

    Jupyter Notebook 7 1

Repositories

Showing 10 of 24 repositories
  • Sabate_et_al_TAD_Anchors Public

    Python scripts to analyze loop extrusion from microscopy images and simulations

    imodpasteur/Sabate_et_al_TAD_Anchors’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 30, 2024
  • ShareLoc.XYZ Public

    A platform for sharing localization microscopy data.

    imodpasteur/ShareLoc.XYZ’s past year of commit activity
    JavaScript 3 MIT 2 22 16 Updated Mar 12, 2024
  • shareloc-collection Public

    RDF Collection for ShareLoc.XYZ

    imodpasteur/shareloc-collection’s past year of commit activity
    Python 2 0 0 1 Updated Jan 24, 2024
  • Brightfield-Drift-Correction-3D Public

    Acquire bright field images along with the super resolution data and use it to track drift in 3D with nanometer precision!

    imodpasteur/Brightfield-Drift-Correction-3D’s past year of commit activity
    Python 9 MIT 0 1 0 Updated Jun 22, 2023
  • ANNA-PALM Public

    Accelerating Single Molecule Localization Microscopy with Deep Learning

    imodpasteur/ANNA-PALM’s past year of commit activity
    Python 49 14 12 2 Updated Mar 24, 2023
  • shareloc-utils Public

    Utility tools for ShareLoc.XYZ

    imodpasteur/shareloc-utils’s past year of commit activity
    Python 0 MIT 0 1 18 Updated Mar 6, 2023
  • LoopExtrusion Public

    A tool to simulate loop extrusion in chromatin

    imodpasteur/LoopExtrusion’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jan 11, 2023
  • smlm-file-format Public

    A portable and extendable file format for storing and sharing localization microscopy data.

    imodpasteur/smlm-file-format’s past year of commit activity
    Java 5 MIT 2 0 1 Updated Oct 6, 2022
  • ZOLA-3D Public

    Zernike Optimized Localization Algorithm for 3D single molecule localizations

    imodpasteur/ZOLA-3D’s past year of commit activity
    Java 13 GPL-3.0 3 4 0 Updated Sep 20, 2022
  • imodpasteur/smlm-viewer’s past year of commit activity
    JavaScript 0 0 0 0 Updated Aug 4, 2021

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